Hi,
have you tried testing the actual caps on each distro, I mean, capture with BT4R2 and save it to bt4-cap.cap then test cracking on both distros, then capture with BT5 as say, bt5-cap.cap and test that on both. If I read your post correctly, it seems you have tried capture and crack seperately on each distro, so there is a few exta variables in your test environment.
It may well be that the wireless drivers have changed between distros, or for some reason your capture wasn't good with BT5.


