I belive this might be a driver issue, but for some reason my ALFA (wlan1) will not detect WPA/WPA2 Auth. It will read all connections as WEP even though they are WPA/WPA2 in WA (Wireless Assistant). Although my built in WiFi can read it perfectly fine (wlan0). I guess i will have to get used to connect through the shell. =\
I am running BTA3 Final on a USB drive.