CAT5e and CAT6 inherently have 'some' shielding in the way the wires are twisted together. There is STP cable, but it is mostly used in areas were interference from either RF or EMI sources are present. I've installed it once in a police department where the 150W radios of the police cruisers were interfering with the network.
You cannot install STP cable unless the rest of the equipment you're using is going to properly ground the cable. So you'd need a patch panel that is going to ground all the connectors that are plugged in. STP cable is much harder to work with as well as the shielding makes the cable very stiff. You also need to purchase special RJ45's for STP to allow for a shielded connection.
One more thing to add:
When you're running network cable in any environment you need to be aware of where you're running it. You should keep it at least 3feet from florescent fixtures (the ballast especially) and you should always cross 120v/240v lines at right angles. CAT5e/6 should never be run parallel to power lines. When terminating, you should untwist the cable no more than 1/2inch. I just ran some line in one of our stations and had to keep it 6 feet from the 480V 3phase VFD's to prevent interference. I did not run STP, but just kept aware of the potential issues so I could use UTP.


So I cursed Belkin for selling me sh!t cables and put my 5e cables back.
Looking into it, I realized STP=Sheilded Twisted pair (and U=Unsheileded). I never realized this option existed with ethernet cables, I assumed they were all sheilded. So, I'm guessing the old CAT6 cables I bought were UTP (?). Would it be correct to say then that STP CAT5e cables perform better than CAT6 UTP cables then?

That's why I tested the cables (right out of the box) sitting at my desk with the switch and 2 computers (all 1000Base-T). I simply swapped the CAT5e cables out and the CAT6 cables in, leaving everything else identical (even transferred the same files). And the result was significantly lower thruput. I'm having trouble explaining/understanding this. Hence, the sh!t cables remark... or the thought the CAT6 maybe UTP (?) ...or some other possible explanation...? 