Agree with the flag suggestion
I'm working on building a similar multiboot device with the following tools:
Backtrack4
DamnSmallLinux
Mint
Ultimate Boot CD
Derik's Boot & Nuke
BartPE winXP
PartedMagic
NTPasswd
OphCrack
Untangled
As well as additional files / utilities:
Drivers
Installers
Templates
Scripts
In order to keep the drive somewhat in order the folderstructure for bootable images is:
Root (w/ syslinux, syslinux.cfg etc)
\images\[toolname]
I am using syslinux as well to manage as with this many different tools a fixed partition scheme would be difficult and an unnecessary waste of time for managing. The first partition on removable drives is the only one recognized by windows boxes without making a few changes. Leaving everything in the root makes things a mess to manage and leaves things like
\boot
\casper
\data
commonly used and conflicting.